Alignment Program

  ALN Overview Online
  Pairwase alignment of biological sequences supporting spliced alignment procedures
  PRRN Overview Online
  Multiple sequence alignment by doubly nested randomized iterative method
  SPALN Overview Online
  Mapping and Alignment of a set of cDNA sequences onto a genomic sequence
  Exon finding by genomic sequence comparison
  CGALN Overview Download
  Fast and memory-efficient pairwise genomic sequence alignment program

All of program sources are freely available at each page.